Variant report

Variant	rs10123186
Chromosome Location	chr9:96272261-96272262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212662..96217709-chr9:96266725..96273295,11	MCF-7	breast:
2	chr9:96271314..96273553-chr9:96337771..96340620,2	MCF-7	breast:
3	chr9:96267811..96269599-chr9:96270496..96273259,2	MCF-7	breast:
4	chr9:96257222..96259306-chr9:96272126..96274228,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992758	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28406634	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
4	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
10	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
11	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:96264000-96273000	Weak transcription	Ovary	ovary
13	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
16	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
17	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
19	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
20	chr9:96264000-96286600	Weak transcription	NH-A	brain
21	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
24	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:96265800-96273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
29	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:96266000-96273400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:96266000-96273600	Weak transcription	Brain Anterior Caudate	brain
32	chr9:96266000-96274000	Weak transcription	NHLF	lung
33	chr9:96266000-96275600	Weak transcription	Fetal Brain Female	brain
34	chr9:96266000-96279800	Weak transcription	HSMM	muscle
35	chr9:96266600-96275600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:96266600-96279200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:96266800-96274200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:96267200-96273400	Weak transcription	Fetal Lung	lung
39	chr9:96267200-96273600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:96267200-96275200	Weak transcription	NHEK	skin
41	chr9:96267200-96276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:96267200-96279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:96267200-96279800	Weak transcription	NHDF-Ad	bronchial
44	chr9:96267800-96272800	Weak transcription	Stomach Mucosa	stomach
45	chr9:96267800-96273000	Strong transcription	Dnd41	blood
46	chr9:96268000-96273800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:96268000-96278600	Weak transcription	Liver	Liver
48	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr9:96268200-96272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:96268400-96272400	Weak transcription	Small Intestine	intestine

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