Variant report

Variant	rs61636268
Chromosome Location	chr9:96341372-96341373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96207292..96208805-chr9:96339241..96341688,2	MCF-7	breast:
2	chr9:95818234..95820974-chr9:96339140..96341685,2	MCF-7	breast:
3	chr15:64672393..64674955-chr9:96338463..96341441,2	MCF-7	breast:
4	chr9:96340603..96342904-chr9:96370807..96373306,2	K562	blood:
5	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
6	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
7	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
8	chr9:96323290..96325963-chr9:96339113..96341830,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166803	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123186	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28406634	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96339800-96341400	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr9:96339800-96341600	Flanking Active TSS	Fetal Brain Female	brain
3	chr9:96340000-96341400	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr9:96340000-96344400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:96340200-96341400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr9:96340200-96341600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:96340200-96342200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:96340200-96342400	Enhancers	Fetal Brain Male	brain
9	chr9:96340400-96341400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:96340400-96341400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:96340400-96341400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:96340400-96341400	Enhancers	Small Intestine	intestine
13	chr9:96340400-96344000	Weak transcription	Aorta	Aorta
14	chr9:96340400-96344200	Weak transcription	K562	blood
15	chr9:96340400-96344800	Enhancers	Gastric	stomach
16	chr9:96340400-96344800	Enhancers	Spleen	Spleen
17	chr9:96340400-96345200	Enhancers	Liver	Liver
18	chr9:96340400-96345600	Enhancers	Stomach Mucosa	stomach
19	chr9:96340400-96348200	Weak transcription	Fetal Kidney	kidney
20	chr9:96340400-96351200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:96340600-96341400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr9:96340600-96341400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:96340600-96341400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:96340600-96341400	Enhancers	Brain Substantia Nigra	brain
25	chr9:96340600-96341400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:96340600-96341400	Enhancers	Fetal Intestine Small	intestine
27	chr9:96340600-96341400	Enhancers	Lung	lung
28	chr9:96340600-96341600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:96340600-96341600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:96340600-96342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:96340600-96342200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:96340600-96342400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:96340600-96342600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:96340600-96342600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:96340600-96342600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:96340600-96343800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:96340600-96343800	Enhancers	Esophagus	oesophagus
38	chr9:96340600-96344200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:96340600-96344200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr9:96340600-96344400	Weak transcription	HSMMtube	muscle
41	chr9:96340600-96344600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr9:96340600-96344800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:96340600-96344800	Enhancers	Brain Cingulate Gyrus	brain
44	chr9:96340600-96345000	Enhancers	Adipose Nuclei	Adipose
45	chr9:96340600-96345000	Enhancers	Fetal Muscle Trunk	muscle
46	chr9:96340600-96345000	Enhancers	Placenta	Placenta
47	chr9:96340600-96345000	Enhancers	Left Ventricle	heart
48	chr9:96340600-96346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr9:96340600-96351600	Weak transcription	Thymus	Thymus
50	chr9:96340800-96341400	Enhancers	Hela-S3	cervix

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