Variant report

Variant	rs7871486
Chromosome Location	chr9:96293205-96293206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96290471..96293694-chr9:96293846..96296779,3	MCF-7	breast:
2	chr9:96212967..96214736-chr9:96291128..96293396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992753	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992758	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12336831	0.84[YRI][hapmap]
rs12337821	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339736	1.00[MKK][hapmap];0.84[YRI][hapmap]
rs12340218	1.00[MKK][hapmap]
rs12340447	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344021	1.00[MKK][hapmap];0.84[YRI][hapmap]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs2150750	0.82[YRI][hapmap]
rs28406634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021294	0.84[YRI][hapmap]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
3	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
10	chr9:96279000-96297400	Strong transcription	HepG2	liver
11	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
12	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas
15	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
16	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
22	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:96285000-96298800	Strong transcription	A549	lung
28	chr9:96285000-96301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:96285000-96304000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:96285000-96327000	Strong transcription	Dnd41	blood
32	chr9:96285200-96296600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:96285200-96299600	Strong transcription	Fetal Intestine Large	intestine
34	chr9:96285200-96299600	Strong transcription	Thymus	Thymus
35	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:96285400-96294200	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:96285400-96296400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:96285400-96297800	Strong transcription	Colonic Mucosa	Colon
39	chr9:96285400-96299800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr9:96285400-96304200	Strong transcription	HSMM	muscle
41	chr9:96285400-96327800	Strong transcription	Liver	Liver
42	chr9:96285600-96297600	Strong transcription	NHEK	skin
43	chr9:96285600-96301000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:96285600-96310000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:96285800-96298600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:96285800-96298600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:96285800-96298800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:96285800-96303400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:96286000-96299400	Strong transcription	Fetal Thymus	thymus
50	chr9:96286000-96301200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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