Variant report

Variant	rs28406634
Chromosome Location	chr9:96262070-96262071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96248016..96251380-chr9:96259927..96262755,3	MCF-7	breast:
2	chr9:96212252..96216666-chr9:96261096..96265019,5	K562	blood:
3	chr9:96213983..96216666-chr9:96261096..96263660,2	K562	blood:
4	chr9:96261936..96263563-chr9:96264731..96266679,2	MCF-7	breast:
5	chr9:96261356..96262938-chr9:96267899..96270000,2	MCF-7	breast:
6	chr9:96254779..96257844-chr9:96259033..96262456,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.83[AFR][1000 genomes]
rs10992753	0.83[AFR][1000 genomes]
rs10992758	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
4	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
5	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:96249000-96262400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:96250400-96262600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:96250400-96262600	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr9:96250400-96266000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr9:96250600-96262400	Strong transcription	Fetal Stomach	stomach
12	chr9:96252800-96262600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr9:96253200-96263000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr9:96254400-96262200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:96254600-96262400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:96254600-96263000	Strong transcription	Thymus	Thymus
17	chr9:96254600-96263200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:96254800-96262200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:96254800-96262400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:96254800-96263200	Strong transcription	Primary B cells from cord blood	blood
21	chr9:96254800-96263200	Strong transcription	Fetal Muscle Leg	muscle
22	chr9:96254800-96266600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:96255000-96262200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr9:96255000-96262200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr9:96255200-96262200	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:96255200-96266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:96255200-96267200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:96255400-96262200	Weak transcription	Psoas Muscle	Psoas
29	chr9:96255400-96262200	Strong transcription	A549	lung
30	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:96255600-96263000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr9:96255800-96262200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:96255800-96262400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:96255800-96263200	Strong transcription	GM12878-XiMat	blood
35	chr9:96255800-96266200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:96255800-96266800	Strong transcription	HepG2	liver
37	chr9:96256000-96262200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:96256000-96262600	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr9:96256000-96262600	Strong transcription	Placenta	Placenta
40	chr9:96256000-96263000	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:96256000-96263200	Strong transcription	K562	blood
42	chr9:96256000-96265000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:96256200-96262200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:96256200-96262200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:96256200-96262600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:96256200-96262600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr9:96256400-96262200	Strong transcription	Adipose Nuclei	Adipose
48	chr9:96256400-96262400	Strong transcription	Hela-S3	cervix
49	chr9:96256400-96263200	Strong transcription	NH-A	brain
50	chr9:96256400-96265400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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