Variant report

Variant	rs10118281
Chromosome Location	chr9:96356445-96356446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96355442..96358084-chr9:96410672..96413121,3	MCF-7	breast:
2	chr9:96337228..96342243-chr9:96353878..96357514,8	K562	blood:
3	chr9:96350798..96352728-chr9:96354476..96356898,3	K562	blood:
4	chr9:96353562..96356481-chr9:96362305..96366209,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992758	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28406634	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96341600-96359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:96342200-96359600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:96342600-96357800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:96343400-96360600	Weak transcription	Dnd41	blood
6	chr9:96345000-96362600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:96347400-96359000	Enhancers	Left Ventricle	heart
8	chr9:96347600-96360600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:96348400-96360200	Weak transcription	Primary B cells from cord blood	blood
10	chr9:96348400-96360200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:96351400-96357600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:96351400-96359600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:96352400-96357000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:96352400-96357000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr9:96352400-96357200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:96352400-96358400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:96352400-96358600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:96352400-96360200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:96352400-96361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:96352400-96384600	Weak transcription	NHLF	lung
24	chr9:96352600-96358800	Weak transcription	Primary T cells from cord blood	blood
25	chr9:96352600-96362400	Weak transcription	Fetal Lung	lung
26	chr9:96352800-96358200	Weak transcription	Aorta	Aorta
27	chr9:96352800-96360600	Weak transcription	Thymus	Thymus
28	chr9:96352800-96360800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:96353000-96360000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:96353000-96360400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:96353400-96360000	Weak transcription	Brain Germinal Matrix	brain
32	chr9:96353800-96357000	Enhancers	NHDF-Ad	bronchial
33	chr9:96354000-96357200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr9:96354200-96356600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr9:96354200-96357000	Enhancers	Adipose Nuclei	Adipose
36	chr9:96354200-96361400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:96354400-96360000	Weak transcription	Fetal Brain Female	brain
38	chr9:96354600-96357000	Enhancers	Fetal Intestine Large	intestine
39	chr9:96354600-96357200	Enhancers	Fetal Muscle Leg	muscle
40	chr9:96354600-96357200	Enhancers	Stomach Mucosa	stomach
41	chr9:96354600-96359800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:96354800-96356600	Enhancers	Fetal Intestine Small	intestine
43	chr9:96354800-96357000	Enhancers	Fetal Muscle Trunk	muscle
44	chr9:96355000-96356600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:96355000-96356800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:96355000-96357000	Enhancers	Psoas Muscle	Psoas
47	chr9:96355000-96357200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr9:96355000-96361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr9:96355200-96356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:96355200-96357800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links