Variant report

Variant	rs10992758
Chromosome Location	chr9:96257431-96257432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96250614..96253263-chr9:96255648..96258129,2	K562	blood:
2	chr9:96250087..96251859-chr9:96255047..96257485,2	MCF-7	breast:
3	chr9:96248820..96250684-chr9:96255799..96258276,2	MCF-7	breast:
4	chr9:96257222..96259306-chr9:96272126..96274228,2	MCF-7	breast:
5	chr9:96253909..96256008-chr9:96256047..96257816,2	MCF-7	breast:
6	chr9:96257221..96259479-chr9:96265119..96266696,2	K562	blood:
7	chr9:96254779..96257844-chr9:96259033..96262456,3	MCF-7	breast:
8	chr9:96212979..96215355-chr9:96255923..96258152,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992753	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12336831	0.84[YRI][hapmap]
rs12337821	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339736	0.84[YRI][hapmap]
rs12340447	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344021	0.84[YRI][hapmap]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs2150750	0.82[YRI][hapmap]
rs28406634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021294	0.84[YRI][hapmap]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
4	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
8	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
9	chr9:96241800-96259800	Strong transcription	Dnd41	blood
10	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:96243200-96259800	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:96243400-96258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:96244800-96262000	Strong transcription	Primary T cells from cord blood	blood
15	chr9:96248000-96259000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:96248000-96259600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:96249000-96262400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:96250000-96260000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:96250400-96262600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:96250400-96262600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr9:96250400-96266000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr9:96250600-96262400	Strong transcription	Fetal Stomach	stomach
23	chr9:96251800-96261600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:96252800-96262600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr9:96253200-96263000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr9:96254000-96261000	Weak transcription	Stomach Mucosa	stomach
27	chr9:96254400-96257600	Enhancers	Right Atrium	heart
28	chr9:96254400-96259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:96254400-96262200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:96254600-96262400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr9:96254600-96263000	Strong transcription	Thymus	Thymus
32	chr9:96254600-96263200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:96254800-96262000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:96254800-96262200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:96254800-96262400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:96254800-96263200	Strong transcription	Primary B cells from cord blood	blood
37	chr9:96254800-96263200	Strong transcription	Fetal Muscle Leg	muscle
38	chr9:96254800-96266600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:96255000-96262200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr9:96255000-96262200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:96255200-96262200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:96255200-96266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:96255200-96267200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:96255400-96257800	Strong transcription	Ovary	ovary
45	chr9:96255400-96262200	Weak transcription	Psoas Muscle	Psoas
46	chr9:96255400-96262200	Strong transcription	A549	lung
47	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:96255600-96263000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr9:96255800-96260200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr9:96255800-96260200	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links