Variant report

Variant	rs28666855
Chromosome Location	chr9:96288570-96288571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96288428-96288589	MCF-7	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96283749..96287240-chr9:96288399..96291092,3	K562	blood:
2	chr9:96211644..96215224-chr9:96285600..96289647,5	MCF-7	breast:
3	chr9:96212405..96217053-chr9:96287727..96291116,5	MCF-7	breast:
4	chr9:96287109..96291346-chr9:96292892..96295512,4	MCF-7	breast:
5	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
6	chr9:96287503..96289688-chr9:96299052..96301851,2	K562	blood:
7	chr9:96286264..96288852-chr9:96329560..96332298,3	MCF-7	breast:

No data

Variant related genes	Relation type
FAM120A	TF binding region
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.83[AFR][1000 genomes]
rs10992753	0.83[AFR][1000 genomes]
rs10992758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28406634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
5	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
7	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
9	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
18	chr9:96279000-96297400	Strong transcription	HepG2	liver
19	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
20	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas
23	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
24	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:96283200-96289400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:96283200-96291200	Weak transcription	Fetal Brain Female	brain
27	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:96284200-96290600	Enhancers	Fetal Heart	heart
29	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:96284800-96292000	Strong transcription	Fetal Intestine Small	intestine
33	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
34	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:96285000-96288600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:96285000-96289200	Strong transcription	Hela-S3	cervix
38	chr9:96285000-96292000	Strong transcription	Fetal Muscle Leg	muscle
39	chr9:96285000-96292200	Strong transcription	Primary T cells from cord blood	blood
40	chr9:96285000-96292200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:96285000-96292200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr9:96285000-96293200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:96285000-96298800	Strong transcription	A549	lung
47	chr9:96285000-96301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:96285000-96304000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:96285000-96327000	Strong transcription	Dnd41	blood

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