Variant report

Variant	rs7033089
Chromosome Location	chr9:96345647-96345648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123186	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992758	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28406634	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs73651245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96340400-96348200	Weak transcription	Fetal Kidney	kidney
2	chr9:96340400-96351200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:96340600-96346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:96340600-96351600	Weak transcription	Thymus	Thymus
5	chr9:96340800-96346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:96340800-96346800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:96341000-96347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:96341000-96348800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:96341200-96347400	Weak transcription	Primary T cells from cord blood	blood
10	chr9:96341200-96351200	Weak transcription	NHDF-Ad	bronchial
11	chr9:96341400-96350200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:96341400-96356000	Weak transcription	Hela-S3	cervix
13	chr9:96341600-96351600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:96341600-96359600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:96341800-96362200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr9:96342200-96359600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:96342600-96347600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:96342600-96357800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:96343200-96348000	Weak transcription	Brain Germinal Matrix	brain
20	chr9:96343400-96360600	Weak transcription	Dnd41	blood
21	chr9:96343600-96347400	Weak transcription	Fetal Stomach	stomach
22	chr9:96343600-96347600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:96343600-96350000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:96343800-96347400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:96343800-96348000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:96343800-96349200	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:96344000-96348400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:96344200-96348400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:96344600-96348600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:96344800-96347400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:96344800-96347600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:96344800-96347600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:96344800-96347600	Weak transcription	Gastric	stomach
34	chr9:96344800-96347600	Weak transcription	Spleen	Spleen
35	chr9:96344800-96347800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:96344800-96348000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:96344800-96348200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:96344800-96348400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:96344800-96348400	Weak transcription	Brain Angular Gyrus	brain
40	chr9:96344800-96348600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:96344800-96348600	Weak transcription	Fetal Brain Male	brain
42	chr9:96344800-96349000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:96344800-96356400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:96345000-96346200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:96345000-96347200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:96345000-96347400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:96345000-96347400	Weak transcription	Esophagus	oesophagus
48	chr9:96345000-96347400	Weak transcription	Left Ventricle	heart
49	chr9:96345000-96347400	Weak transcription	Ovary	ovary
50	chr9:96345000-96347400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links