Variant report
| Variant | rs7848429 |
|---|---|
| Chromosome Location | chr9:96491976-96491977 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10116959 | 1.00[EUR][1000 genomes] |
| rs10118281 | 1.00[EUR][1000 genomes] |
| rs10121798 | 1.00[EUR][1000 genomes] |
| rs10123412 | 1.00[EUR][1000 genomes] |
| rs10992822 | 1.00[EUR][1000 genomes] |
| rs1123475 | 1.00[EUR][1000 genomes] |
| rs12337821 | 1.00[EUR][1000 genomes] |
| rs12340447 | 1.00[EUR][1000 genomes] |
| rs12344186 | 1.00[EUR][1000 genomes] |
| rs12346586 | 1.00[EUR][1000 genomes] |
| rs12348843 | 1.00[EUR][1000 genomes] |
| rs12349453 | 1.00[EUR][1000 genomes] |
| rs12350884 | 1.00[EUR][1000 genomes] |
| rs16909307 | 1.00[EUR][1000 genomes] |
| rs28369450 | 1.00[EUR][1000 genomes] |
| rs28464341 | 1.00[EUR][1000 genomes] |
| rs28497808 | 1.00[EUR][1000 genomes] |
| rs28523540 | 1.00[EUR][1000 genomes] |
| rs28591208 | 1.00[EUR][1000 genomes] |
| rs28630935 | 1.00[EUR][1000 genomes] |
| rs28848910 | 1.00[EUR][1000 genomes] |
| rs58747030 | 1.00[EUR][1000 genomes] |
| rs58925215 | 1.00[EUR][1000 genomes] |
| rs61281791 | 1.00[EUR][1000 genomes] |
| rs61301026 | 1.00[EUR][1000 genomes] |
| rs61636268 | 1.00[EUR][1000 genomes] |
| rs7021423 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7022246 | 1.00[EUR][1000 genomes] |
| rs7033089 | 1.00[EUR][1000 genomes] |
| rs73651251 | 1.00[EUR][1000 genomes] |
| rs73651269 | 1.00[EUR][1000 genomes] |
| rs73651270 | 1.00[EUR][1000 genomes] |
| rs73651297 | 1.00[EUR][1000 genomes] |
| rs73651298 | 1.00[EUR][1000 genomes] |
| rs7850596 | 1.00[EUR][1000 genomes] |
| rs7854758 | 1.00[EUR][1000 genomes] |
| rs7856259 | 1.00[EUR][1000 genomes] |
| rs7871486 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893586 | chr9:96363859-96493773 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv1805275 | chr9:96470473-96501599 | Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1832783 | chr9:96470686-96501599 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1798985 | chr9:96470848-96501850 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv1799910 | chr9:96470848-96501905 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96490200-96494000 | Enhancers | Fetal Stomach | stomach |
| 2 | chr9:96491000-96492200 | Enhancers | Stomach Smooth Muscle | stomach |
| 3 | chr9:96491400-96492400 | Enhancers | Colon Smooth Muscle | Colon |
