Variant report

Variant	rs10116959
Chromosome Location	chr9:96363531-96363532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96363030..96364591-chr9:96367019..96369226,2	MCF-7	breast:
2	chr9:96363027..96365894-chr9:96366005..96367741,2	K562	blood:
3	chr9:96353562..96356481-chr9:96362305..96366209,4	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10117404	1.00[EUR][1000 genomes]
rs10118281	1.00[EUR][1000 genomes]
rs10118574	1.00[EUR][1000 genomes]
rs10118955	1.00[EUR][1000 genomes]
rs10121548	1.00[EUR][1000 genomes]
rs10121798	1.00[EUR][1000 genomes]
rs10123186	1.00[EUR][1000 genomes]
rs10123412	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992758	1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[EUR][1000 genomes]
rs12340447	1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28406634	1.00[EUR][1000 genomes]
rs28464341	1.00[EUR][1000 genomes]
rs28523540	1.00[EUR][1000 genomes]
rs28630935	1.00[EUR][1000 genomes]
rs28666855	1.00[EUR][1000 genomes]
rs28728320	1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58925215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61467488	1.00[EUR][1000 genomes]
rs61636268	1.00[EUR][1000 genomes]
rs7021423	1.00[EUR][1000 genomes]
rs7022246	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs7033089	1.00[EUR][1000 genomes]
rs73651245	1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7856259	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870048	1.00[EUR][1000 genomes]
rs7871486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96349000-96365800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:96352400-96366000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:96352400-96384600	Weak transcription	NHLF	lung
5	chr9:96356400-96364000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:96356600-96365600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:96357000-96367000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:96357600-96364200	Enhancers	Pancreas	Pancrea
9	chr9:96357600-96364600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:96358200-96363600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:96358400-96364000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:96358400-96365200	Enhancers	Primary B cells from peripheral blood	blood
13	chr9:96359200-96364000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr9:96359600-96363600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr9:96359600-96363800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:96359600-96363800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr9:96359600-96364200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:96359600-96364200	Enhancers	Lung	lung
19	chr9:96359600-96364400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:96359600-96364400	Enhancers	Left Ventricle	heart
21	chr9:96359800-96363600	Enhancers	Fetal Thymus	thymus
22	chr9:96360000-96363600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:96360000-96363600	Enhancers	Brain Substantia Nigra	brain
24	chr9:96360000-96364000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr9:96360000-96365000	Enhancers	Brain Germinal Matrix	brain
26	chr9:96360200-96363600	Enhancers	Fetal Intestine Large	intestine
27	chr9:96360200-96364000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:96360400-96364200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:96360400-96364400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr9:96360800-96363600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr9:96360800-96364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr9:96361000-96364200	Enhancers	H9 Cell Line	embryonic stem cell
33	chr9:96361000-96364400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr9:96361000-96369400	Weak transcription	Dnd41	blood
35	chr9:96361200-96364000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:96361200-96364000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr9:96361200-96364200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:96361400-96363800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr9:96361400-96363800	Enhancers	Colon Smooth Muscle	Colon
40	chr9:96361400-96364000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr9:96361400-96372000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:96361400-96380400	Weak transcription	Fetal Brain Male	brain
43	chr9:96361600-96363600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:96361600-96363600	Enhancers	Thymus	Thymus
45	chr9:96361600-96364200	Enhancers	Fetal Muscle Leg	muscle
46	chr9:96361600-96364800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:96361600-96365200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr9:96361600-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:96361800-96363800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr9:96362000-96364200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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