Variant report

Variant	rs61467488
Chromosome Location	chr9:96283050-96283051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96213470..96216216-chr9:96280346..96283406,4	MCF-7	breast:
2	chr9:96219136..96220997-chr9:96281166..96283983,2	MCF-7	breast:
3	chr9:96281724..96284045-chr9:96336142..96339221,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10117404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122307	0.80[AFR][1000 genomes]
rs10123186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10125504	0.83[AFR][1000 genomes]
rs10992753	0.83[AFR][1000 genomes]
rs10992758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28406634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28464341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61636268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651296	1.00[AMR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7870048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
9	chr9:96264000-96286600	Weak transcription	NH-A	brain
10	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
11	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
12	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:96273800-96286600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
18	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
20	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:96276200-96286000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:96276200-96287800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:96277400-96284200	Weak transcription	Fetal Heart	heart
26	chr9:96278200-96283200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:96278200-96283200	Strong transcription	Thymus	Thymus
28	chr9:96278200-96283400	Strong transcription	Fetal Muscle Leg	muscle
29	chr9:96278200-96283600	Strong transcription	Dnd41	blood
30	chr9:96278200-96284400	Strong transcription	Fetal Intestine Large	intestine
31	chr9:96278400-96283200	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:96278400-96283400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:96278400-96283600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr9:96278400-96283800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:96278400-96283800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:96278400-96283800	Strong transcription	Fetal Stomach	stomach
37	chr9:96278400-96284000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr9:96278600-96283600	Strong transcription	Liver	Liver
43	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:96278800-96283600	Strong transcription	Fetal Thymus	thymus
45	chr9:96278800-96283600	Strong transcription	Stomach Smooth Muscle	stomach
46	chr9:96278800-96283800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:96278800-96284000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr9:96278800-96286800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
50	chr9:96279000-96283200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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