Variant report

Variant	rs7021423
Chromosome Location	chr9:96486898-96486899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10116959	1.00[EUR][1000 genomes]
rs10118281	1.00[EUR][1000 genomes]
rs10121798	1.00[EUR][1000 genomes]
rs10123412	1.00[EUR][1000 genomes]
rs10992822	1.00[EUR][1000 genomes]
rs1123475	1.00[EUR][1000 genomes]
rs12337821	1.00[EUR][1000 genomes]
rs12340447	1.00[EUR][1000 genomes]
rs12344186	1.00[EUR][1000 genomes]
rs12346586	1.00[EUR][1000 genomes]
rs12348843	1.00[EUR][1000 genomes]
rs12349453	1.00[EUR][1000 genomes]
rs12350884	1.00[EUR][1000 genomes]
rs16909307	1.00[EUR][1000 genomes]
rs28369450	1.00[EUR][1000 genomes]
rs28464341	1.00[EUR][1000 genomes]
rs28497808	1.00[EUR][1000 genomes]
rs28523540	1.00[EUR][1000 genomes]
rs28591208	1.00[EUR][1000 genomes]
rs28630935	1.00[EUR][1000 genomes]
rs28666855	1.00[EUR][1000 genomes]
rs28848910	1.00[EUR][1000 genomes]
rs58747030	1.00[EUR][1000 genomes]
rs58925215	1.00[EUR][1000 genomes]
rs61281791	1.00[EUR][1000 genomes]
rs61301026	1.00[EUR][1000 genomes]
rs61636268	1.00[EUR][1000 genomes]
rs7022246	1.00[EUR][1000 genomes]
rs7033089	1.00[EUR][1000 genomes]
rs73651251	1.00[EUR][1000 genomes]
rs73651269	1.00[EUR][1000 genomes]
rs73651270	1.00[EUR][1000 genomes]
rs73651297	1.00[EUR][1000 genomes]
rs73651298	1.00[EUR][1000 genomes]
rs7848429	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7850596	1.00[EUR][1000 genomes]
rs7854758	1.00[EUR][1000 genomes]
rs7856259	1.00[EUR][1000 genomes]
rs7871486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1805275	chr9:96470473-96501599	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832783	chr9:96470686-96501599	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1798985	chr9:96470848-96501850	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1799910	chr9:96470848-96501905	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96484800-96487000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
2	chr9:96485600-96487200	ZNF genes & repeats	Colon Smooth Muscle	Colon
3	chr9:96486600-96487200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr9:96486800-96488800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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