Variant report

Variant	rs7021294
Chromosome Location	chr9:96221341-96221342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
2	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
3	chr9:96220469..96222711-chr9:96337665..96339518,2	MCF-7	breast:
4	chr9:96221028..96223549-chr9:96326289..96328880,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10115231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	0.94[AFR][1000 genomes]
rs10118574	0.84[YRI][hapmap]
rs10121042	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121548	0.84[YRI][hapmap]
rs10122307	0.92[AFR][1000 genomes]
rs10125213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992730	0.80[YRI][hapmap]
rs10992753	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10992758	0.84[YRI][hapmap]
rs12336645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337821	0.84[YRI][hapmap]
rs12338407	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340218	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344021	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870048	0.84[YRI][hapmap]
rs7871486	0.84[YRI][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:96216800-96222400	Enhancers	HepG2	liver
9	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
11	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
12	chr9:96217000-96222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:96217200-96221400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
16	chr9:96217400-96221400	Weak transcription	HSMMtube	muscle
17	chr9:96217400-96222800	Weak transcription	Thymus	Thymus
18	chr9:96217400-96223200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:96217400-96230800	Weak transcription	HSMM	muscle
21	chr9:96217600-96221400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:96217600-96221600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:96217600-96223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
26	chr9:96218000-96221800	Weak transcription	Primary B cells from cord blood	blood
27	chr9:96218000-96222000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:96218000-96222400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr9:96218200-96221600	Enhancers	Fetal Intestine Large	intestine
30	chr9:96218400-96222000	Genic enhancers	Dnd41	blood
31	chr9:96218400-96223600	Enhancers	Small Intestine	intestine
32	chr9:96218600-96223600	Enhancers	Stomach Mucosa	stomach
33	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
34	chr9:96219200-96229000	Weak transcription	NH-A	brain
35	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:96219400-96221400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:96219400-96221400	Weak transcription	NHLF	lung
38	chr9:96219400-96222200	Enhancers	Duodenum Mucosa	Duodenum
39	chr9:96219400-96222600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr9:96219400-96223400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr9:96219400-96225800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:96219400-96226000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:96220000-96221400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:96220000-96221800	Genic enhancers	K562	blood
45	chr9:96220000-96222400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:96220000-96222400	Enhancers	Colon Smooth Muscle	Colon
47	chr9:96220000-96223400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr9:96220000-96223600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr9:96220200-96221400	Enhancers	Primary T cells fromperipheralblood	blood
50	chr9:96220200-96221400	Enhancers	NHEK	skin

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