Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96152691..96156290-chr9:96211984..96215549,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10115231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	0.94[AFR][1000 genomes]
rs10121042	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122307	0.86[AFR][1000 genomes]
rs10125213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992753	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	0.84[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340218	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344021	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391568	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021294	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96153200-96156200	Enhancers	Placenta	Placenta
2	chr9:96153400-96161000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:96153600-96156000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr9:96154800-96156000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:96155200-96156000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:96155200-96156000	ZNF genes & repeats	Lung	lung
7	chr9:96155600-96156000	Enhancers	Colonic Mucosa	Colon

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