Variant report

Variant	rs28391568
Chromosome Location	chr9:96232112-96232113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
2	chr9:96229227..96230937-chr9:96231650..96233389,2	MCF-7	breast:
3	chr9:96230132..96232279-chr9:96234940..96236781,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10115231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	0.94[AFR][1000 genomes]
rs10121042	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122307	0.92[AFR][1000 genomes]
rs10125213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338407	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
3	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
11	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
12	chr9:96227600-96232400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:96228000-96232800	Enhancers	Right Ventricle	heart
14	chr9:96228200-96233600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:96228600-96232800	Enhancers	Hela-S3	cervix
16	chr9:96228800-96233000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:96229400-96233200	Enhancers	HepG2	liver
18	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
19	chr9:96230000-96232600	Weak transcription	Primary B cells from cord blood	blood
20	chr9:96230000-96235800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:96230000-96242200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
23	chr9:96230200-96232600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr9:96231000-96232400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:96231000-96233600	Enhancers	Brain Cingulate Gyrus	brain
26	chr9:96231200-96232200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:96231200-96232200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:96231400-96233000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:96231400-96233200	Weak transcription	Primary T cells from cord blood	blood
30	chr9:96231600-96232200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr9:96231600-96232200	Enhancers	Fetal Lung	lung
32	chr9:96231600-96232200	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr9:96231600-96232600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:96231600-96232600	Weak transcription	Dnd41	blood
35	chr9:96231600-96232800	Weak transcription	Brain Angular Gyrus	brain
36	chr9:96231600-96232800	Weak transcription	Brain Substantia Nigra	brain
37	chr9:96231600-96232800	Weak transcription	Colonic Mucosa	Colon
38	chr9:96231600-96232800	Weak transcription	Gastric	stomach
39	chr9:96231600-96232800	Weak transcription	Psoas Muscle	Psoas
40	chr9:96231600-96233000	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:96231600-96233200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:96231600-96233400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:96231600-96233400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr9:96231600-96233400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:96231600-96233400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:96231600-96233400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:96231600-96233400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:96231600-96233400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr9:96231600-96233400	Weak transcription	Fetal Muscle Leg	muscle
50	chr9:96231600-96233400	Weak transcription	Fetal Thymus	thymus

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