Variant report

Variant	rs61256841
Chromosome Location	chr9:96194349-96194350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr9:96193973-96194636	HepG2	liver:	n/a	chr9:96194153-96194171
2	MAFK	chr9:96193992-96194704	HepG2	liver:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
3	ELF1	chr9:96194076-96194357	HepG2	liver:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
4	GATA3	chr9:96193486-96194405	MCF-7	breast:	n/a	n/a
5	SPI1	chr9:96194039-96194383	HL-60	blood:	n/a	chr9:96194203-96194212
6	ELF1	chr9:96193719-96194492	MCF-7	breast:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
7	ELF1	chr9:96194080-96194356	HepG2	liver:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
8	MAFK	chr9:96193865-96194772	HepG2	liver:	n/a	chr9:96194150-96194167 chr9:96194158-96194169 chr9:96194159-96194170 chr9:96194154-96194170 chr9:96194157-96194171 chr9:96194154-96194169 chr9:96194159-96194170
9	ELF1	chr9:96194075-96194389	K562	blood:	n/a	chr9:96194201-96194214 chr9:96194203-96194214 chr9:96194227-96194240
10	JUND	chr9:96194170-96194353	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:96054744..96057085-chr9:96193778..96195427,2	MCF-7	breast:
2	chr9:96193866..96195671-chr9:96205217..96208189,2	K562	blood:
3	chr9:96193694..96195891-chr9:96211466..96214118,3	K562	blood:
4	chr9:96194036..96195679-chr9:96195790..96198245,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM120A-2	chr9:96193447-96194991	NONHSAT133251

Variant related genes	Relation type
ENSG00000237385	TF binding region
ENSG00000165238	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10115231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	1.00[AFR][1000 genomes]
rs10121042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122307	0.92[AFR][1000 genomes]
rs10125213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344021	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96190600-96196600	Weak transcription	Placenta	Placenta
5	chr9:96193000-96196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:96193200-96194400	Enhancers	Fetal Intestine Large	intestine
7	chr9:96193800-96194400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:96193800-96194400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:96193800-96194400	Enhancers	Fetal Intestine Small	intestine
10	chr9:96193800-96194400	Enhancers	Fetal Kidney	kidney
11	chr9:96193800-96194400	Enhancers	Small Intestine	intestine
12	chr9:96193800-96194400	Flanking Active TSS	HepG2	liver
13	chr9:96193800-96194400	Enhancers	K562	blood
14	chr9:96193800-96194800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:96194000-96194400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:96194000-96194400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:96194000-96194400	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:96194000-96194400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:96194000-96194400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:96194000-96194400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
22	chr9:96194200-96194400	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:96194200-96194400	Enhancers	Spleen	Spleen
24	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood

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