Variant report

Variant	rs12340218
Chromosome Location	chr9:96154441-96154442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96152691..96156290-chr9:96211984..96215549,4	MCF-7	breast:
2	chr9:96153147..96155133-chr9:96159213..96160900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10115231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116211	0.91[AFR][1000 genomes]
rs10121042	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121418	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122307	0.83[AFR][1000 genomes]
rs10125213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125504	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125642	1.00[AMR][1000 genomes]
rs10992753	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336831	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337821	0.82[ASW][hapmap];1.00[MKK][hapmap]
rs12338407	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339736	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341311	1.00[MKK][hapmap]
rs12344021	1.00[ASW][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150750	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021294	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7864834	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868214	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870048	0.82[ASW][hapmap];1.00[MKK][hapmap]
rs7871486	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96153200-96155200	Enhancers	Colonic Mucosa	Colon
2	chr9:96153200-96156200	Enhancers	Placenta	Placenta
3	chr9:96153400-96161000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96153600-96154800	Enhancers	Fetal Intestine Large	intestine
5	chr9:96153600-96155400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr9:96153600-96156000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr9:96153800-96154600	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:96154000-96154800	Enhancers	Fetal Intestine Small	intestine
9	chr9:96154200-96154800	Active TSS	Rectal Smooth Muscle	rectum
10	chr9:96154400-96154600	Enhancers	Rectal Mucosa Donor 31	rectum

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