Variant report

Variant	rs1011861
Chromosome Location	chr2:142861471-142861472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142856831..142859163-chr2:142860211..142863049,2	MCF-7	breast:
2	chr2:142860532..142863086-chr2:142865572..142867375,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10179879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10181071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10190320	1.00[JPT][hapmap]
rs10201480	0.82[ASN][1000 genomes]
rs10205169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12691633	1.00[JPT][hapmap]
rs12994651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13398962	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13400121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13401617	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13405280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13408764	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13412878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13418304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13420312	1.00[JPT][hapmap]
rs1375607	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1982384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34199884	0.82[ASN][1000 genomes]
rs35975765	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4267463	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs62155635	0.82[ASN][1000 genomes]
rs7574284	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs956799	1.00[JPT][hapmap]
rs956800	1.00[JPT][hapmap]
rs9630925	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142857400-142862800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:142858800-142861600	Weak transcription	Hela-S3	cervix
3	chr2:142860800-142863000	Enhancers	Brain Angular Gyrus	brain
4	chr2:142861000-142862600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:142861200-142862200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:142861200-142862200	Enhancers	Brain Anterior Caudate	brain
7	chr2:142861400-142861600	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr2:142861400-142861800	Enhancers	Brain Cingulate Gyrus	brain
9	chr2:142861400-142862400	Enhancers	Brain Hippocampus Middle	brain
10	chr2:142861400-142862600	Enhancers	Brain Germinal Matrix	brain

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