Variant report

Variant	rs10201480
Chromosome Location	chr2:142831841-142831842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1001628	0.93[ASN][1000 genomes]
rs1011861	0.82[ASN][1000 genomes]
rs10179879	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181071	1.00[ASN][1000 genomes]
rs10201177	0.81[CEU][hapmap]
rs11677303	0.80[ASN][1000 genomes]
rs11888082	0.81[CEU][hapmap]
rs12691633	0.91[CEU][hapmap];0.86[ASN][1000 genomes]
rs12994651	0.91[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012748	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13382235	0.85[CEU][hapmap]
rs13385180	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs13392919	0.81[CEU][hapmap]
rs13398962	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13400121	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs13401617	1.00[ASN][1000 genomes]
rs13405280	0.91[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408764	1.00[ASN][1000 genomes]
rs13412878	1.00[YRI][hapmap]
rs13418304	0.91[CEU][hapmap]
rs13420312	0.91[CEU][hapmap]
rs1375607	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1449491	0.82[CEU][hapmap]
rs1449502	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1562705	0.80[ASN][1000 genomes]
rs16847971	0.91[CEU][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17832157	0.82[CEU][hapmap]
rs1982384	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs2044731	1.00[JPT][hapmap]
rs34199884	1.00[ASN][1000 genomes]
rs34725547	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35975765	1.00[ASN][1000 genomes]
rs4267463	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62155635	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749591	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7574284	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs895935	0.80[ASN][1000 genomes]
rs9630925	0.91[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875253	chr2:142805006-142855291	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142829400-142838200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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