Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10179879	0.91[CEU][hapmap]
rs10201177	0.81[CEU][hapmap]
rs10201480	0.82[CEU][hapmap]
rs11677303	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12691633	0.91[CEU][hapmap]
rs12994651	0.91[CEU][hapmap]
rs13012748	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs13016007	1.00[JPT][hapmap]
rs13385180	0.91[CEU][hapmap]
rs13392919	0.81[CEU][hapmap]
rs13400121	0.82[CEU][hapmap]
rs13405280	0.91[CEU][hapmap]
rs13418304	0.91[CEU][hapmap]
rs13420312	0.91[CEU][hapmap]
rs1449502	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1562705	1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs16847971	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17832157	0.82[CEU][hapmap]
rs1982384	0.91[CEU][hapmap]
rs34725547	0.94[ASN][1000 genomes]
rs6749591	0.91[CEU][hapmap]
rs7574284	0.91[CEU][hapmap]
rs895935	1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs9630925	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142791400-142794400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:142791600-142794400	Weak transcription	NH-A	brain
3	chr2:142791800-142794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:142792000-142795800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:142792200-142794400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:142793600-142794200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:142793600-142795600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:142793800-142794800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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