Variant report

Variant	rs11677303
Chromosome Location	chr2:142794718-142794719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10179879	0.80[ASN][1000 genomes]
rs10181071	0.80[ASN][1000 genomes]
rs10201480	0.80[ASN][1000 genomes]
rs12994651	0.80[ASN][1000 genomes]
rs13012748	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs13016007	1.00[JPT][hapmap]
rs13398962	0.94[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13400121	0.80[ASN][1000 genomes]
rs13401617	0.80[ASN][1000 genomes]
rs13405280	0.80[ASN][1000 genomes]
rs13408764	0.80[ASN][1000 genomes]
rs1375607	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1449491	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1449502	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1562705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847971	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34199884	0.80[ASN][1000 genomes]
rs34725547	1.00[ASN][1000 genomes]
rs35975765	0.80[ASN][1000 genomes]
rs4267463	0.94[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62155635	0.80[ASN][1000 genomes]
rs895935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895936	0.89[YRI][hapmap]
rs9630925	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142792000-142795800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:142793600-142795600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:142793800-142794800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:142794200-142794800	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:142794200-142796200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:142794400-142795000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:142794400-142795400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:142794400-142795600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:142794400-142795600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:142794400-142795800	Enhancers	NHEK	skin
11	chr2:142794400-142796200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:142794400-142796200	Enhancers	Brain Anterior Caudate	brain
13	chr2:142794400-142796600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:142794400-142797400	Enhancers	HMEC	breast
15	chr2:142794400-142802400	Enhancers	NH-A	brain
16	chr2:142794600-142794800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:142794600-142795000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:142794600-142795000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:142794600-142795000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:142794600-142795200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr2:142794600-142795200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:142794600-142795200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:142794600-142795400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:142794600-142795400	Enhancers	Brain Hippocampus Middle	brain
25	chr2:142794600-142795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr2:142794600-142795800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:142794600-142796200	Enhancers	Brain Substantia Nigra	brain
28	chr2:142794600-142796800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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