Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10179879	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10181071	0.80[ASN][1000 genomes]
rs10201480	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11677303	1.00[ASN][1000 genomes]
rs12994651	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13012748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398962	0.80[ASN][1000 genomes]
rs13400121	0.80[ASN][1000 genomes]
rs13401617	0.80[ASN][1000 genomes]
rs13405280	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13408764	0.80[ASN][1000 genomes]
rs1375607	0.80[ASN][1000 genomes]
rs1449491	0.94[ASN][1000 genomes]
rs1449502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562705	1.00[ASN][1000 genomes]
rs16847971	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34199884	0.80[ASN][1000 genomes]
rs35975765	0.80[ASN][1000 genomes]
rs4267463	0.80[ASN][1000 genomes]
rs62155635	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs895935	1.00[ASN][1000 genomes]
rs9630925	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142794400-142802400	Enhancers	NH-A	brain
2	chr2:142795800-142802600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:142796200-142801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:142796200-142809800	Weak transcription	Brain Substantia Nigra	brain
5	chr2:142799000-142801600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:142799000-142801800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:142800000-142801800	Weak transcription	HMEC	breast
8	chr2:142800400-142801200	Weak transcription	Hela-S3	cervix
9	chr2:142800400-142801600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:142800400-142803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:142800400-142810200	Weak transcription	Brain Anterior Caudate	brain

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