Variant report

Variant	rs13392919
Chromosome Location	chr2:142885011-142885012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10164457	0.90[CEU][hapmap]
rs10179879	0.90[CEU][hapmap]
rs10187861	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194564	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10197442	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201177	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201480	0.81[CEU][hapmap]
rs11888082	0.90[CEU][hapmap]
rs12691633	0.90[CEU][hapmap]
rs12994651	0.90[CEU][hapmap]
rs13012748	0.90[CEU][hapmap]
rs13382235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385180	0.90[CEU][hapmap]
rs13400121	0.81[CEU][hapmap]
rs13405280	0.90[CEU][hapmap]
rs13417943	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13418304	0.90[CEU][hapmap]
rs13420312	0.90[CEU][hapmap]
rs1349224	0.90[CEU][hapmap]
rs1449491	0.81[CEU][hapmap]
rs1449502	0.90[CEU][hapmap]
rs16847971	0.90[CEU][hapmap]
rs17832157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982384	0.90[CEU][hapmap]
rs28587375	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35829239	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4662401	1.00[CHB][hapmap]
rs6721602	0.90[CEU][hapmap]
rs6749591	0.90[CEU][hapmap]
rs6756877	0.86[ASN][1000 genomes]
rs7574284	0.90[CEU][hapmap]
rs9287333	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630925	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv979390	chr2:142883251-142888150	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142878200-142886800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:142879200-142887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:142882800-142885600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:142883000-142885400	Weak transcription	Fetal Brain Male	brain
5	chr2:142883000-142885800	Weak transcription	Brain Angular Gyrus	brain
6	chr2:142884600-142885400	Weak transcription	Brain Anterior Caudate	brain
7	chr2:142884600-142885400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:142884600-142885800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:142885000-142887600	Active TSS	Fetal Brain Female	brain

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