Variant report

Variant	rs10119783
Chromosome Location	chr9:10173689-10173690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117980	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.86[YRI][hapmap]
rs10809034	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10958932	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs10958933	0.85[CEU][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.80[TSI][hapmap];0.87[EUR][1000 genomes]
rs12338662	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12352128	0.90[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs13283791	0.90[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1358889	0.89[CHD][hapmap];0.82[GIH][hapmap]
rs1407351	0.85[CEU][hapmap]
rs16931225	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[YRI][hapmap]
rs17620334	0.86[CHB][hapmap]
rs291289	0.81[CEU][hapmap]
rs35032760	0.84[ASN][1000 genomes]
rs4740442	0.80[CEU][hapmap]
rs66483257	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831506	chr9:10040172-10204609	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024401	chr9:10105656-10218577	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv539995	chr9:10105656-10218577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892308	chr9:10139580-10178560	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv892309	chr9:10158866-10192290	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv471280	chr9:10172572-10277602	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv466158	chr9:10172573-10277602	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613375	chr9:10172573-10277602	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10172000-10174000	Enhancers	Fetal Heart	heart
2	chr9:10173600-10174400	Enhancers	Fetal Brain Male	brain
3	chr9:10173600-10174800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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