Variant report

Variant	rs10120786
Chromosome Location	chr9:14994156-14994157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10116892	1.00[AMR][1000 genomes]
rs10119106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10119155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121863	1.00[AMR][1000 genomes]
rs10961804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961805	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335589	1.00[AMR][1000 genomes]
rs12336541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340983	1.00[AMR][1000 genomes]
rs12344718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28491680	1.00[AMR][1000 genomes]
rs7018670	1.00[AMR][1000 genomes]
rs7027934	1.00[AMR][1000 genomes]
rs9298711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14991600-14994400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:14991800-14994400	Active TSS	NHDF-Ad	bronchial
3	chr9:14992000-14994200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:14992000-14994200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:14992000-14994400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:14992200-14994400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr9:14992200-14994800	Active TSS	Psoas Muscle	Psoas
8	chr9:14992200-14995000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:14992400-14994200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr9:14992400-14994400	Enhancers	Small Intestine	intestine
11	chr9:14992400-14995000	Flanking Active TSS	Dnd41	blood
12	chr9:14992600-14994200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr9:14992600-14994200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr9:14992800-14994200	Active TSS	H1 Cell Line	embryonic stem cell
15	chr9:14992800-14994200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:14992800-14994200	Active TSS	NH-A	brain
17	chr9:14992800-14994400	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr9:14992800-14994400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:14992800-14994400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr9:14993000-14994200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:14993000-14994200	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr9:14993000-14994200	Active TSS	Colonic Mucosa	Colon
23	chr9:14993000-14994200	Flanking Active TSS	Fetal Thymus	thymus
24	chr9:14993000-14994400	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr9:14993000-14994600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:14993000-14994800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr9:14993000-14994800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:14993200-14994200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:14993200-14994600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr9:14993400-14994200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr9:14993400-14994200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:14993400-14994200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr9:14993400-14994600	Flanking Active TSS	HUVEC	blood vessel
34	chr9:14993600-14994200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:14993600-14994200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr9:14993600-14994200	Flanking Active TSS	Thymus	Thymus
37	chr9:14993600-14994200	Weak transcription	Spleen	Spleen
38	chr9:14993600-14994600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:14993800-14994200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr9:14993800-14994200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr9:14993800-14994200	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr9:14993800-14994200	Flanking Active TSS	Fetal Brain Male	brain
43	chr9:14993800-14994400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr9:14993800-14994400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr9:14993800-14994400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr9:14993800-14994400	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr9:14993800-14994400	Flanking Active TSS	Fetal Kidney	kidney
48	chr9:14993800-14994400	Flanking Active TSS	Fetal Lung	lung
49	chr9:14993800-14994600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr9:14993800-14994600	Enhancers	Placenta	Placenta

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