Variant report

Variant	rs28491680
Chromosome Location	chr9:15085699-15085700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10116892	1.00[AMR][1000 genomes]
rs10119106	1.00[AMR][1000 genomes]
rs10119155	1.00[AMR][1000 genomes]
rs10120786	1.00[AMR][1000 genomes]
rs10121761	1.00[AMR][1000 genomes]
rs10121863	1.00[AMR][1000 genomes]
rs10961804	1.00[AMR][1000 genomes]
rs10961805	1.00[AMR][1000 genomes]
rs12335589	1.00[AMR][1000 genomes]
rs12336541	1.00[AMR][1000 genomes]
rs12337735	1.00[AMR][1000 genomes]
rs12340983	1.00[AMR][1000 genomes]
rs12344718	1.00[AMR][1000 genomes]
rs9298711	1.00[AMR][1000 genomes]
rs9298712	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15080200-15086400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:15084600-15086600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:15085000-15087200	Enhancers	Fetal Stomach	stomach
4	chr9:15085400-15088200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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