Variant report

Variant	rs10121953
Chromosome Location	chr9:108185369-108185370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12348331	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16924584	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018526	0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7025836	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7031606	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7032034	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036215	0.81[AMR][1000 genomes]
rs7042977	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7857578	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7859070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:108182600-108193800	Weak transcription	Brain Angular Gyrus	brain
6	chr9:108182600-108193800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:108182800-108193600	Weak transcription	Brain Substantia Nigra	brain
8	chr9:108182800-108193800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:108183000-108194000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:108183600-108188000	Weak transcription	Liver	Liver
11	chr9:108184400-108193600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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