Variant report

Variant	rs7031606
Chromosome Location	chr9:108181107-108181108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108181084..108183179-chr9:108184863..108187693,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10121953	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348331	0.81[AMR][1000 genomes]
rs16924584	0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018526	0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7025836	0.81[AMR][1000 genomes]
rs7032034	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036215	0.81[AMR][1000 genomes]
rs7042977	0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7857578	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7859070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108175600-108181200	Enhancers	HepG2	liver
2	chr9:108175800-108181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:108176200-108188200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:108177600-108186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:108177800-108182200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:108178000-108181800	Weak transcription	Fetal Intestine Small	intestine
9	chr9:108179200-108183200	Enhancers	Fetal Brain Male	brain
10	chr9:108179600-108184200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:108180000-108182200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:108180400-108181200	Enhancers	Liver	Liver
13	chr9:108180600-108181200	Enhancers	Fetal Intestine Large	intestine
14	chr9:108180600-108182800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:108180600-108183400	Enhancers	Fetal Brain Female	brain
16	chr9:108180600-108184400	Enhancers	Brain Hippocampus Middle	brain
17	chr9:108180800-108181200	Enhancers	Stomach Mucosa	stomach
18	chr9:108180800-108181600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:108180800-108181800	Enhancers	Fetal Lung	lung
20	chr9:108180800-108182200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr9:108180800-108182600	Enhancers	Brain Angular Gyrus	brain
22	chr9:108180800-108182800	Enhancers	Brain Substantia Nigra	brain
23	chr9:108181000-108181400	Enhancers	Adipose Nuclei	Adipose
24	chr9:108181000-108181400	Enhancers	A549	lung
25	chr9:108181000-108182400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:108181000-108182600	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:108181000-108182800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:108181000-108183000	Enhancers	Brain Anterior Caudate	brain

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