Variant report

Variant	rs10123013
Chromosome Location	chr9:108547625-108547626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108207677..108209988-chr9:108545420..108547936,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10114077	0.85[AFR][1000 genomes]
rs10115852	0.82[AFR][1000 genomes]
rs10119128	0.81[AFR][1000 genomes]
rs10121695	0.82[AFR][1000 genomes]
rs10156569	0.83[AFR][1000 genomes]
rs10512340	0.84[AFR][1000 genomes]
rs10759132	0.83[AFR][1000 genomes]
rs10759134	0.84[AFR][1000 genomes]
rs10816301	0.82[AFR][1000 genomes]
rs10816302	0.82[AFR][1000 genomes]
rs10816304	0.83[AFR][1000 genomes]
rs10816310	0.83[AFR][1000 genomes]
rs10816313	0.80[AFR][1000 genomes]
rs10816328	0.80[AFR][1000 genomes]
rs10816338	0.82[AFR][1000 genomes]
rs10978228	0.83[AFR][1000 genomes]
rs10978235	0.84[AFR][1000 genomes]
rs10978255	0.81[AFR][1000 genomes]
rs10978264	0.82[AFR][1000 genomes]
rs11562290	0.83[AFR][1000 genomes]
rs12001759	0.86[AFR][1000 genomes]
rs12003526	0.86[AFR][1000 genomes]
rs12341885	0.82[AFR][1000 genomes]
rs12344225	0.82[AFR][1000 genomes]
rs12347783	0.86[AFR][1000 genomes]
rs12348647	0.83[AFR][1000 genomes]
rs13286237	0.84[AFR][1000 genomes]
rs1979992	0.85[AFR][1000 genomes]
rs2136407	0.82[AFR][1000 genomes]
rs2136408	0.82[AFR][1000 genomes]
rs2175121	0.82[AFR][1000 genomes]
rs2175122	0.82[AFR][1000 genomes]
rs35164306	0.82[AFR][1000 genomes]
rs3817141	0.82[AFR][1000 genomes]
rs6477453	0.83[AFR][1000 genomes]
rs6477454	0.82[AFR][1000 genomes]
rs6477462	0.83[AFR][1000 genomes]
rs6477463	0.83[AFR][1000 genomes]
rs6477464	0.85[AFR][1000 genomes]
rs6477466	0.82[AFR][1000 genomes]
rs7021727	0.86[AFR][1000 genomes]
rs7026814	0.84[AFR][1000 genomes]
rs7026968	0.84[AFR][1000 genomes]
rs7030399	0.82[AFR][1000 genomes]
rs7031360	0.85[AFR][1000 genomes]
rs7031431	0.82[AFR][1000 genomes]
rs7038788	0.83[AFR][1000 genomes]
rs7040532	0.82[AFR][1000 genomes]
rs7846853	0.83[AFR][1000 genomes]
rs7846993	0.83[AFR][1000 genomes]
rs7848176	0.82[AFR][1000 genomes]
rs7853483	0.82[AFR][1000 genomes]
rs7858663	0.85[AFR][1000 genomes]
rs7862921	0.82[AFR][1000 genomes]
rs7867973	0.85[AFR][1000 genomes]
rs7871452	0.83[AFR][1000 genomes]
rs7873663	0.83[AFR][1000 genomes]
rs7874069	0.81[AFR][1000 genomes]
rs9777628	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	esv1846655	chr9:108536712-108569642	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10123013	TMEM38B	cis	brain	BrainEAC

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108515200-108560600	Weak transcription	Ovary	ovary
2	chr9:108530400-108552600	Weak transcription	Pancreas	Pancrea
3	chr9:108539200-108548400	Weak transcription	Primary B cells from cord blood	blood
4	chr9:108539200-108552200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108546800-108547800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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