Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:142026136..142028912-chr9:117471929..117474480,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10114581	0.82[ASN][1000 genomes]
rs10125974	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739424	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739425	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739426	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982368	0.83[EUR][1000 genomes]
rs10982373	0.81[EUR][1000 genomes]
rs1328537	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1359992	0.85[AMR][1000 genomes]
rs1410559	0.98[ASN][1000 genomes]
rs1410560	0.98[ASN][1000 genomes]
rs1539614	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2183019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296948	0.81[EUR][1000 genomes]
rs4979450	0.82[AMR][1000 genomes]
rs4979456	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979458	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7846710	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853396	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7860022	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117471000-117472200	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr9:117471600-117472400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:117471600-117473200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:117471800-117472600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:117471800-117473200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:117472000-117472400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:117472000-117480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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