Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10114581	0.82[ASN][1000 genomes]
rs10123202	0.98[ASN][1000 genomes]
rs10125974	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739424	0.95[ASN][1000 genomes]
rs10739425	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739426	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759733	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10817667	1.00[CEU][hapmap]
rs10982373	0.84[CEU][hapmap]
rs1328537	0.92[ASN][1000 genomes]
rs1410559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539614	0.97[ASN][1000 genomes]
rs1557220	0.96[CEU][hapmap]
rs2149370	0.96[CEU][hapmap]
rs2183019	0.91[ASN][1000 genomes]
rs4979456	0.98[ASN][1000 genomes]
rs7846710	0.92[ASN][1000 genomes]
rs7853396	0.97[ASN][1000 genomes]
rs9695517	0.88[CEU][hapmap]
rs9886907	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117462200-117471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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