Variant report

Variant	rs10817667
Chromosome Location	chr9:117462359-117462360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117455344..117457782-chr9:117461706..117463500,2	MCF-7	breast:
2	chr9:117456868..117459697-chr9:117461590..117464560,2	K562	blood:

Variant related genes	Relation type
ENSG00000230284	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10513257	0.93[ASN][1000 genomes]
rs10817665	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10817666	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10817668	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10982370	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10982372	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10982373	0.85[CEU][hapmap]
rs1410561	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1831177	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2149370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979453	0.82[AFR][1000 genomes]
rs4979454	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4979457	0.82[EUR][1000 genomes]
rs6478099	0.81[CEU][hapmap]
rs7022339	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7039257	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7048742	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7850949	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7860720	0.83[EUR][1000 genomes]
rs7868007	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7869653	0.93[CHB][hapmap]
rs9695517	0.89[CEU][hapmap]
rs9886907	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117460000-117463800	Weak transcription	HSMM	muscle
2	chr9:117460000-117464000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:117460000-117464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117460200-117463200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:117460200-117463400	Weak transcription	Hela-S3	cervix
6	chr9:117460200-117464200	Weak transcription	NHDF-Ad	bronchial
7	chr9:117461000-117464200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:117461600-117462400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:117462000-117462400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:117462200-117462800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:117462200-117471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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