Variant report

Variant	rs1410561
Chromosome Location	chr9:117473992-117473993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:142026136..142028912-chr9:117471929..117474480,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513257	0.83[ASN][1000 genomes]
rs10817665	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10817666	0.81[ASN][1000 genomes]
rs10817667	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10817668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982370	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10982372	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10982373	0.85[CEU][hapmap]
rs1557220	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1831177	0.81[AMR][1000 genomes]
rs2149370	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4979454	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4979457	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6478099	0.81[CEU][hapmap]
rs7022339	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7039257	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7048742	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7850949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7860720	0.82[EUR][1000 genomes]
rs7868007	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7869653	0.80[YRI][hapmap]
rs9695517	0.89[CEU][hapmap]
rs9886907	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117472000-117480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:117472400-117477800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:117472600-117478400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:117473200-117477800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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