Variant report

Variant	rs10123374
Chromosome Location	chr9:108683878-108683879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10114385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117135	1.00[ASN][1000 genomes]
rs10124171	0.89[ASN][1000 genomes]
rs10733556	1.00[ASN][1000 genomes]
rs10733557	1.00[ASN][1000 genomes]
rs10739216	1.00[ASN][1000 genomes]
rs10759153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759154	1.00[ASN][1000 genomes]
rs1987136	0.81[EUR][1000 genomes]
rs1987248	1.00[ASN][1000 genomes]
rs2417657	0.89[ASN][1000 genomes]
rs2417662	1.00[ASN][1000 genomes]
rs2417676	1.00[ASN][1000 genomes]
rs4507827	1.00[ASN][1000 genomes]
rs4742973	1.00[ASN][1000 genomes]
rs7043384	0.80[EUR][1000 genomes]
rs7856876	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108682800-108684200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:108683000-108684600	Enhancers	Fetal Heart	heart
3	chr9:108683400-108684200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:108683600-108684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:108683600-108684200	Enhancers	Right Atrium	heart
6	chr9:108683600-108684400	Enhancers	Left Ventricle	heart
7	chr9:108683800-108684200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:108683800-108684400	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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