Variant report

Variant	rs7043384
Chromosome Location	chr9:108668126-108668127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10114385	0.80[EUR][1000 genomes]
rs10115085	0.80[EUR][1000 genomes]
rs10117602	0.80[EUR][1000 genomes]
rs10123374	0.80[EUR][1000 genomes]
rs10759149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759150	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759151	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10759152	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759153	0.80[EUR][1000 genomes]
rs10816353	0.89[ASN][1000 genomes]
rs10978330	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10978340	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10978359	0.81[ASN][1000 genomes]
rs16925032	0.80[EUR][1000 genomes]
rs1961970	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1987136	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1987247	0.94[ASN][1000 genomes]
rs2417644	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2417658	0.95[ASN][1000 genomes]
rs2417659	0.90[ASN][1000 genomes]
rs2417660	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900404	0.80[EUR][1000 genomes]
rs3884524	0.89[ASN][1000 genomes]
rs4598317	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4742967	0.80[EUR][1000 genomes]
rs4742969	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4742974	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4742975	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6477482	0.80[EUR][1000 genomes]
rs7025973	0.80[EUR][1000 genomes]
rs7030289	0.92[ASN][1000 genomes]
rs7040788	0.80[EUR][1000 genomes]
rs7040794	0.80[EUR][1000 genomes]
rs7044156	0.80[EUR][1000 genomes]
rs72732742	0.89[ASN][1000 genomes]
rs7851747	0.92[ASN][1000 genomes]
rs7856876	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108664400-108672400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:108664400-108672600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:108664800-108673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:108666200-108670200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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