Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108663460..108664528-chr9:108683360..108684140,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10759149	0.91[ASN][1000 genomes]
rs10759150	0.91[ASN][1000 genomes]
rs10759151	0.93[ASN][1000 genomes]
rs10759152	0.93[ASN][1000 genomes]
rs10978340	0.87[ASN][1000 genomes]
rs10978359	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10978363	0.84[EUR][1000 genomes]
rs1961970	0.94[ASN][1000 genomes]
rs1987136	0.93[ASN][1000 genomes]
rs1987247	0.95[ASN][1000 genomes]
rs2417658	0.93[ASN][1000 genomes]
rs2417659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417660	0.93[ASN][1000 genomes]
rs3884524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742974	0.93[ASN][1000 genomes]
rs4742975	0.81[ASN][1000 genomes]
rs7030289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043384	0.89[ASN][1000 genomes]
rs72732742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7851747	0.93[ASN][1000 genomes]
rs7856876	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108674000-108683600	Weak transcription	Left Ventricle	heart
2	chr9:108674600-108683600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:108681400-108683800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:108682800-108684200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:108683000-108683800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:108683000-108684600	Enhancers	Fetal Heart	heart
7	chr9:108683400-108684200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:108683600-108684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:108683600-108684200	Enhancers	Right Atrium	heart
10	chr9:108683600-108684400	Enhancers	Left Ventricle	heart

Quick Search: