Variant report

Variant	rs10978363
Chromosome Location	chr9:108742160-108742161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10816353	0.84[EUR][1000 genomes]
rs10978359	0.87[EUR][1000 genomes]
rs2417659	0.84[EUR][1000 genomes]
rs3884524	0.84[EUR][1000 genomes]
rs7030289	0.84[EUR][1000 genomes]
rs72732742	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108733600-108743000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:108737600-108743000	Enhancers	Fetal Brain Male	brain
3	chr9:108738000-108743000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:108739200-108742200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:108740600-108742200	Enhancers	Fetal Brain Female	brain
6	chr9:108741200-108742200	Enhancers	Brain Substantia Nigra	brain
7	chr9:108741400-108743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:108741400-108743000	Enhancers	Fetal Heart	heart
9	chr9:108742000-108742200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:108742000-108743000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:108742000-108743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:108742000-108747000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links