Variant report

Variant	rs10978359
Chromosome Location	chr9:108718350-108718351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10759149	0.81[ASN][1000 genomes]
rs10759150	0.82[ASN][1000 genomes]
rs10759151	0.82[ASN][1000 genomes]
rs10759152	0.83[ASN][1000 genomes]
rs10816353	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10978363	0.87[EUR][1000 genomes]
rs1961970	0.85[ASN][1000 genomes]
rs1987136	0.84[ASN][1000 genomes]
rs1987247	0.84[ASN][1000 genomes]
rs2417658	0.83[ASN][1000 genomes]
rs2417659	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417660	0.84[ASN][1000 genomes]
rs3884524	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742974	0.85[ASN][1000 genomes]
rs7030289	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7043384	0.81[ASN][1000 genomes]
rs72732742	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7851747	0.83[ASN][1000 genomes]
rs7856876	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108717200-108718600	Enhancers	Fetal Heart	heart
2	chr9:108717200-108721400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:108717400-108720000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:108717600-108718800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:108717800-108719600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:108718000-108719000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:108718200-108718400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:108718200-108718600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:108718200-108720200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:108718200-108721800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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