Variant report

Variant	rs10759152
Chromosome Location	chr9:108675624-108675625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:108663624..108664357-chr9:108675223..108675797,2	MCF-7	breast:
2	chr3:32489011..32489531-chr9:108674824..108675689,2	MCF-7	breast:
3	chr9:108674585..108677315-chr9:108738998..108740830,2	MCF-7	breast:
4	chr9:108673478..108676397-chr9:109721391..109723728,2	MCF-7	breast:
5	chr9:108669187..108678029-chr9:108711816..108723206,29	MCF-7	breast:
6	chr9:108663623..108664501-chr9:108675047..108675667,2	MCF-7	breast:
7	chr9:108675540..108677148-chr9:108871397..108873655,2	MCF-7	breast:
8	chr9:108673529..108676504-chr9:109332780..109334808,2	MCF-7	breast:
9	chr9:108663424..108664248-chr9:108675232..108676055,3	MCF-7	breast:
10	chr9:108674817..108675675-chr9:109893654..109894276,2	MCF-7	breast:
11	chr9:108674706..108675762-chr9:108716067..108717001,6	MCF-7	breast:
12	chr9:108674841..108675762-chr9:108716167..108716908,4	MCF-7	breast:
13	chr9:108663725..108664575-chr9:108674798..108675705,5	MCF-7	breast:
14	chr9:108674993..108676836-chr9:108680080..108681610,2	MCF-7	breast:
15	chr9:108664026..108664535-chr9:108675067..108675807,2	MCF-7	breast:
16	chr9:108674312..108676473-chr9:108677250..108680180,2	K562	blood:
17	chr9:108671913..108676613-chr9:108714105..108718467,7	MCF-7	breast:
18	chr9:108674978..108676829-chr9:108683959..108687516,4	MCF-7	breast:
19	chr9:108663554..108664575-chr9:108674798..108675780,5	MCF-7	breast:
20	chr9:108674827..108675859-chr9:108716075..108716996,5	MCF-7	breast:
21	chr9:108643116..108645667-chr9:108673078..108675664,2	MCF-7	breast:

No data

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10115085	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10117602	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10120538	0.85[CEU][hapmap]
rs10759149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816353	0.93[ASN][1000 genomes]
rs10978330	0.82[EUR][1000 genomes]
rs10978340	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10978359	0.83[ASN][1000 genomes]
rs16925032	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1961970	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987136	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987247	0.99[ASN][1000 genomes]
rs2417644	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2417658	1.00[ASN][1000 genomes]
rs2417659	0.92[ASN][1000 genomes]
rs2417660	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2900404	0.81[EUR][1000 genomes]
rs3884524	0.93[ASN][1000 genomes]
rs4598317	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4742967	0.81[EUR][1000 genomes]
rs4742969	0.83[EUR][1000 genomes]
rs4742974	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742975	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6477482	0.81[EUR][1000 genomes]
rs7025973	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7030289	0.93[ASN][1000 genomes]
rs7040788	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7040794	0.81[EUR][1000 genomes]
rs7043384	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7044156	0.81[EUR][1000 genomes]
rs72732742	0.93[ASN][1000 genomes]
rs7851747	0.97[ASN][1000 genomes]
rs7856876	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108672400-108676000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:108672600-108677000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:108673000-108677800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:108673200-108675800	Enhancers	Stomach Smooth Muscle	stomach
5	chr9:108673200-108676200	Enhancers	Hela-S3	cervix
6	chr9:108673200-108676600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:108673400-108676600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:108673600-108675800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:108673600-108676000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:108673600-108676000	Enhancers	NHEK	skin
11	chr9:108673800-108675800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:108673800-108676200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:108673800-108679000	Enhancers	HMEC	breast
14	chr9:108674000-108677600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:108674000-108683600	Weak transcription	Left Ventricle	heart
16	chr9:108674200-108677600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:108674400-108676800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:108674400-108683000	Weak transcription	Fetal Heart	heart
19	chr9:108674600-108676000	Weak transcription	Psoas Muscle	Psoas
20	chr9:108674600-108677200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:108674600-108677600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:108674600-108683600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:108675200-108678200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:108675400-108676200	Enhancers	A549	lung
25	chr9:108675400-108676400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:108675400-108676400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:108675400-108676400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:108675400-108676600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:108675400-108680800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:108675600-108675800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:108675600-108676000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:108675600-108676200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:108675600-108676600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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