Variant report

Variant	rs10123991
Chromosome Location	chr9:21852159-21852160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10117733	1.00[AMR][1000 genomes]
rs10123213	1.00[AMR][1000 genomes]
rs12336650	1.00[AMR][1000 genomes]
rs12346276	1.00[AMR][1000 genomes]
rs12352583	1.00[AMR][1000 genomes]
rs28733314	1.00[AMR][1000 genomes]
rs28849154	1.00[AMR][1000 genomes]
rs3731236	1.00[AMR][1000 genomes]
rs73429320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
2	chr9:21839400-21854400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
4	chr9:21841600-21854200	Weak transcription	Hela-S3	cervix
5	chr9:21841600-21854400	Weak transcription	NHLF	lung
6	chr9:21841600-21854600	Weak transcription	NHDF-Ad	bronchial
7	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
8	chr9:21841800-21852200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr9:21841800-21852200	Weak transcription	Pancreas	Pancrea
10	chr9:21841800-21852200	Weak transcription	HepG2	liver
11	chr9:21841800-21852400	Weak transcription	Small Intestine	intestine
12	chr9:21841800-21854600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:21841800-21854800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:21841800-21854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:21841800-21855400	Weak transcription	Gastric	stomach
16	chr9:21841800-21856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:21841800-21856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:21841800-21858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr9:21841800-21864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:21842000-21852800	Weak transcription	HMEC	breast
21	chr9:21842000-21854600	Weak transcription	HSMMtube	muscle
22	chr9:21842000-21854600	Weak transcription	NHEK	skin
23	chr9:21842000-21854600	Weak transcription	Osteobl	bone
24	chr9:21842000-21855000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:21842000-21857800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:21842000-21858400	Weak transcription	Right Ventricle	heart
27	chr9:21846000-21854800	Weak transcription	Fetal Kidney	kidney
28	chr9:21846600-21869800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:21846800-21853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:21847600-21871600	Strong transcription	Dnd41	blood
31	chr9:21847800-21852400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:21847800-21854200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:21848000-21852600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:21848000-21869600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:21848200-21856200	Strong transcription	Primary T cells from cord blood	blood
36	chr9:21848400-21854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:21848800-21852400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:21848800-21852800	Weak transcription	Liver	Liver
39	chr9:21848800-21854000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr9:21848800-21854200	Weak transcription	Thymus	Thymus
41	chr9:21848800-21854200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr9:21848800-21854600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr9:21848800-21854600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:21848800-21854600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:21848800-21854800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:21848800-21861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:21848800-21866000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:21849000-21852200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:21849000-21852400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:21849000-21853600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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