Variant report

Variant	rs73429320
Chromosome Location	chr9:21804876-21804877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21803351..21805632-chr9:22007857..22009751,2	MCF-7	breast:
2	chr9:21804218..21806075-chr9:22088261..22090402,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147883	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10117733	1.00[AMR][1000 genomes]
rs10123213	1.00[AMR][1000 genomes]
rs10123991	1.00[AMR][1000 genomes]
rs12336650	1.00[AMR][1000 genomes]
rs12346276	1.00[AMR][1000 genomes]
rs12352583	1.00[AMR][1000 genomes]
rs28733314	1.00[AMR][1000 genomes]
rs28849154	1.00[AMR][1000 genomes]
rs3731236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21801600-21805000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:21801600-21805000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:21803200-21806400	Weak transcription	Spleen	Spleen
4	chr9:21803400-21805200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr9:21803400-21805200	Flanking Active TSS	HUVEC	blood vessel
6	chr9:21803600-21805000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:21803600-21805000	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:21803600-21805000	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr9:21803600-21805800	Transcr. at gene 5' and 3'	A549	lung
10	chr9:21803600-21806400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:21803600-21806400	Weak transcription	Gastric	stomach
12	chr9:21803600-21808200	Weak transcription	Aorta	Aorta
13	chr9:21803800-21805000	Enhancers	Fetal Heart	heart
14	chr9:21803800-21805200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:21803800-21805200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:21803800-21805200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:21803800-21805200	Flanking Active TSS	NH-A	brain
18	chr9:21803800-21805800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr9:21803800-21805800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:21803800-21806000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr9:21803800-21806200	Weak transcription	Left Ventricle	heart
22	chr9:21803800-21806200	Weak transcription	Lung	lung
23	chr9:21804000-21805000	Enhancers	Primary B cells from cord blood	blood
24	chr9:21804000-21805000	Enhancers	Brain Anterior Caudate	brain
25	chr9:21804000-21805000	Weak transcription	Ovary	ovary
26	chr9:21804000-21805200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr9:21804000-21805200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:21804000-21805200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:21804000-21805200	Enhancers	Brain Substantia Nigra	brain
30	chr9:21804000-21805200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:21804000-21805800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr9:21804000-21806200	Weak transcription	Placenta	Placenta
33	chr9:21804000-21806600	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr9:21804000-21807400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:21804000-21808800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:21804000-21810800	Weak transcription	Right Ventricle	heart
37	chr9:21804000-21814200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr9:21804000-21817600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr9:21804200-21805000	Enhancers	H9 Cell Line	embryonic stem cell
41	chr9:21804200-21805000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr9:21804200-21805000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr9:21804200-21805000	Enhancers	Adipose Nuclei	Adipose
44	chr9:21804200-21805000	Enhancers	Liver	Liver
45	chr9:21804200-21805000	Enhancers	Brain Hippocampus Middle	brain
46	chr9:21804200-21805000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr9:21804200-21805000	Enhancers	Stomach Smooth Muscle	stomach
48	chr9:21804200-21805000	Flanking Active TSS	HepG2	liver
49	chr9:21804200-21805000	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
50	chr9:21804200-21805200	Enhancers	Primary T cells from cord blood	blood

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