Variant report
| Variant | rs10124005 |
|---|---|
| Chromosome Location | chr9:26702699-26702700 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10118730 | 1.00[EUR][1000 genomes] |
| rs10120824 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10125924 | 1.00[EUR][1000 genomes] |
| rs1117679 | 1.00[EUR][1000 genomes] |
| rs1117680 | 1.00[EUR][1000 genomes] |
| rs12336769 | 1.00[EUR][1000 genomes] |
| rs12337751 | 1.00[EUR][1000 genomes] |
| rs12339885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12344232 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12347322 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1812846 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28451412 | 1.00[EUR][1000 genomes] |
| rs28816460 | 1.00[EUR][1000 genomes] |
| rs73429823 | 1.00[EUR][1000 genomes] |
| rs73429839 | 1.00[EUR][1000 genomes] |
| rs73429855 | 1.00[EUR][1000 genomes] |
| rs73429860 | 1.00[EUR][1000 genomes] |
| rs73429861 | 1.00[EUR][1000 genomes] |
| rs73429862 | 1.00[EUR][1000 genomes] |
| rs73429863 | 1.00[EUR][1000 genomes] |
| rs73429867 | 1.00[EUR][1000 genomes] |
| rs73429871 | 1.00[EUR][1000 genomes] |
| rs73429872 | 1.00[EUR][1000 genomes] |
| rs73429880 | 1.00[EUR][1000 genomes] |
| rs7854682 | 1.00[EUR][1000 genomes] |
| rs7856088 | 1.00[EUR][1000 genomes] |
| rs7863872 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995049 | chr9:26162115-26760535 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv892854 | chr9:26326100-26749094 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv892858 | chr9:26609613-26783463 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1026827 | chr9:26693515-26904699 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26702200-26703800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr9:26702400-26703000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
