Variant report

Variant	rs73429855
Chromosome Location	chr9:26785093-26785094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10120824	1.00[EUR][1000 genomes]
rs10124005	1.00[EUR][1000 genomes]
rs1161515	1.00[AMR][1000 genomes]
rs12339885	1.00[EUR][1000 genomes]
rs12344232	1.00[EUR][1000 genomes]
rs12347322	1.00[EUR][1000 genomes]
rs1812846	1.00[EUR][1000 genomes]
rs58092948	1.00[AMR][1000 genomes]
rs58680265	1.00[AMR][1000 genomes]
rs60289603	1.00[AMR][1000 genomes]
rs61242705	1.00[AMR][1000 genomes]
rs73429823	1.00[EUR][1000 genomes]
rs73429839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429844	1.00[AMR][1000 genomes]
rs73429860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429861	1.00[EUR][1000 genomes]
rs73429862	1.00[EUR][1000 genomes]
rs73429863	1.00[EUR][1000 genomes]
rs73429867	1.00[EUR][1000 genomes]
rs73429871	1.00[EUR][1000 genomes]
rs73429872	1.00[EUR][1000 genomes]
rs73429880	1.00[EUR][1000 genomes]
rs73431803	1.00[AMR][1000 genomes]
rs73431849	1.00[AMR][1000 genomes]
rs73431861	1.00[AMR][1000 genomes]
rs73431877	1.00[AMR][1000 genomes]
rs73431887	1.00[AMR][1000 genomes]
rs73431889	1.00[AMR][1000 genomes]
rs73433945	1.00[AMR][1000 genomes]
rs7854682	1.00[EUR][1000 genomes]
rs7856088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863872	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9775714	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1032172	chr9:26742409-26789626	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26780000-26785400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:26783600-26785400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:26785000-26787200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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