Variant report

Variant	rs10124062
Chromosome Location	chr9:98537260-98537261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28454319	0.83[AMR][1000 genomes]
rs3739752	1.00[CEU][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743320	0.83[AMR][1000 genomes]
rs7042092	1.00[CEU][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98534200-98539800	Weak transcription	Lung	lung
2	chr9:98534800-98539200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98535200-98537800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:98535200-98539000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:98535400-98537400	Enhancers	HepG2	liver
6	chr9:98535400-98538600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:98535400-98550800	Weak transcription	Right Atrium	heart
8	chr9:98535600-98537400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:98535600-98538600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:98535600-98539800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:98535600-98545800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:98536000-98546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:98536200-98537800	Weak transcription	Fetal Stomach	stomach
14	chr9:98536400-98541400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:98536800-98537800	Weak transcription	Fetal Lung	lung
16	chr9:98537000-98537800	Enhancers	Ovary	ovary
17	chr9:98537000-98539000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:98537200-98537600	Enhancers	Fetal Intestine Large	intestine
19	chr9:98537200-98538000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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