Variant report

Variant	rs10126835
Chromosome Location	chrX:104740842-104740843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12115987	1.00[YRI][hapmap]
rs2001044	1.00[YRI][hapmap]
rs5916735	1.00[YRI][hapmap]
rs5962525	1.00[YRI][hapmap]
rs5962527	1.00[YRI][hapmap]
rs5962539	1.00[YRI][hapmap]
rs5962540	1.00[YRI][hapmap]
rs7892424	1.00[YRI][hapmap]
rs9785562	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104727800-104747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104728600-104742400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chrX:104738600-104741400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:104738600-104741400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chrX:104738800-104741000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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