Variant report

Variant	rs5962540
Chromosome Location	chrX:104754284-104754285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10126835	1.00[YRI][hapmap]
rs12115987	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs12116055	1.00[GIH][hapmap]
rs1321386	1.00[MEX][hapmap]
rs16984753	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16984759	1.00[GIH][hapmap]
rs16984763	1.00[GIH][hapmap]
rs16984771	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16984773	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2001044	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5916735	1.00[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs5962281	1.00[GIH][hapmap]
rs5962290	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs5962517	1.00[GIH][hapmap]
rs5962521	1.00[GIH][hapmap]
rs5962525	1.00[YRI][hapmap]
rs5962527	1.00[YRI][hapmap]
rs5962536	0.80[ASW][hapmap]
rs5962538	1.00[GIH][hapmap]
rs5962539	1.00[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs6418240	1.00[MEX][hapmap]
rs6523836	1.00[MEX][hapmap]
rs6523846	1.00[MEX][hapmap]
rs6652398	1.00[MEX][hapmap]
rs6652926	1.00[MEX][hapmap]
rs7056795	1.00[MEX][hapmap]
rs7876119	1.00[MEX][hapmap]
rs7876229	1.00[MEX][hapmap]
rs7877795	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7879161	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7886649	1.00[MEX][hapmap]
rs7892424	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs9785562	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs988214	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104747800-104758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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