Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12115987	1.00[GIH][hapmap]
rs12116055	1.00[GIH][hapmap];0.82[MKK][hapmap]
rs12116153	0.88[MKK][hapmap]
rs12392726	1.00[ASW][hapmap]
rs13440860	1.00[YRI][hapmap]
rs13440863	1.00[ASW][hapmap]
rs16984753	1.00[GIH][hapmap]
rs16984759	1.00[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16984763	1.00[ASW][hapmap];1.00[GIH][hapmap]
rs16984771	1.00[GIH][hapmap]
rs16984773	1.00[GIH][hapmap]
rs2001044	1.00[GIH][hapmap]
rs5916735	1.00[GIH][hapmap]
rs5962281	1.00[GIH][hapmap]
rs5962285	1.00[ASW][hapmap]
rs5962290	1.00[GIH][hapmap]
rs5962518	1.00[YRI][hapmap]
rs5962520	1.00[ASW][hapmap]
rs5962521	1.00[ASW][hapmap];1.00[GIH][hapmap]
rs5962533	0.82[MKK][hapmap]
rs5962538	1.00[GIH][hapmap];0.82[MKK][hapmap]
rs5962539	1.00[GIH][hapmap]
rs5962540	1.00[GIH][hapmap]
rs7877795	1.00[GIH][hapmap]
rs7879161	1.00[GIH][hapmap]
rs7892424	1.00[GIH][hapmap]
rs9785562	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104669600-104671000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chrX:104669600-104671000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chrX:104669600-104671200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chrX:104669800-104671000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chrX:104670200-104671000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chrX:104670800-104674200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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