Variant report

Variant	rs5962518
Chromosome Location	chrX:104671035-104671036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13440860	1.00[YRI][hapmap]
rs16984759	1.00[YRI][hapmap]
rs5962517	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104669600-104671200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chrX:104670800-104674200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chrX:104671000-104671200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:104671000-104672200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:104671000-104674200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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