Variant report

Variant	rs12116153
Chromosome Location	chrX:104717863-104717864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10126067	1.00[YRI][hapmap]
rs10127213	1.00[YRI][hapmap]
rs12116055	0.81[ASW][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs16984759	0.86[MKK][hapmap]
rs16984791	1.00[YRI][hapmap]
rs5962517	0.88[MKK][hapmap]
rs5962521	0.84[YRI][hapmap]
rs5962533	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5962538	0.81[ASW][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104716000-104719800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104716400-104719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:104717000-104719600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chrX:104717400-104720000	Weak transcription	NHEK	skin
5	chrX:104717400-104722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chrX:104717600-104719600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links