Variant report
| Variant | rs5962290 |
|---|---|
| Chromosome Location | chrX:104744494-104744495 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12115987 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12116055 | 1.00[GIH][hapmap] |
| rs1321386 | 1.00[MEX][hapmap] |
| rs16984695 | 1.00[MEX][hapmap] |
| rs16984753 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs16984759 | 1.00[GIH][hapmap] |
| rs16984763 | 1.00[GIH][hapmap] |
| rs16984771 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs16984773 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs2001044 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs5916735 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs5962281 | 1.00[GIH][hapmap] |
| rs5962517 | 1.00[GIH][hapmap] |
| rs5962521 | 1.00[GIH][hapmap] |
| rs5962538 | 1.00[GIH][hapmap] |
| rs5962539 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs5962540 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6418240 | 1.00[MEX][hapmap] |
| rs6523836 | 1.00[MEX][hapmap] |
| rs6523846 | 1.00[MEX][hapmap] |
| rs6621959 | 1.00[MEX][hapmap] |
| rs6652398 | 1.00[MEX][hapmap] |
| rs6652926 | 1.00[MEX][hapmap] |
| rs7056795 | 1.00[MEX][hapmap] |
| rs7876119 | 1.00[MEX][hapmap] |
| rs7876229 | 1.00[MEX][hapmap] |
| rs7877795 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs7879161 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs7886649 | 1.00[MEX][hapmap] |
| rs7892424 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs9785562 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs988214 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432352 | chrX:104346855-104831855 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:104727800-104747800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chrX:104743000-104747200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
